PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D10G0938
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 491aa    MW: 54943.1 Da    PI: 8.3649
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D10G0938genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.15.2e-14252302155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV+ +k  grW+A++  +     +k+++lg f+t+ eAa+a+++a+ k +g
  Gh_D10G0938 252 SKYRGVTLHK-CGRWEARLGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 302
                  89********.7******5553..1.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.545157217IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-4157217IPR001471AP2/ERF domain
SMARTSM003801.0E-6157223IPR001471AP2/ERF domain
PfamPF008471.7E-9252302IPR001471AP2/ERF domain
CDDcd000181.48E-24252312No hitNo description
SuperFamilySSF541714.71E-17252312IPR016177DNA-binding domain
PROSITE profilePS5103215.672253310IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-16253310IPR001471AP2/ERF domain
SMARTSM003802.1E-30253316IPR001471AP2/ERF domain
PRINTSPR003675.9E-6254265IPR001471AP2/ERF domain
PRINTSPR003675.9E-6292312IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MWDLNDCPYK ARDNEYEGCS TQRTSKYGDA GNCKRFGSMS NPCSSAVVIE DGSEEEEDRE  60
GVKTALKKKG SKIFGFSMPY DEEESMESSD PTPVTRQLFP LDEDPEMGTG AGPGFPRAHW  120
VGIKFRQSEP YLCGGKSVES SGPMKKSRRG PRSRSSQYRG VTYYRRTGRW ESHIWLVPDI  180
FITATKSLHF EPITTLRLAY DRAAIKFRGV EADINFSVED YEEDLKQMRN LTKEEFVHVL  240
RRQSTGFPRG SSKYRGVTLH KCGRWEARLG QFLGKKYVYL GLFDTEIEAA RAYDKAAIKC  300
NGKDAVTNFD PSIYGNELNN GGETSGNAGG GHNLDLSLGN SVSKQNNPES GPPQTDWRYQ  360
GFKPEEIQQQ EQACRGDDPH RRSDKHIQSP LSVKSNEMQR YGQLRRPGPG ENHMSHILPP  420
RIVNPSIYQI HIASNSGNGV QIGSDVSLSR SAQQGPHQLI ANAGAASSGF PTQTWQQRNG  480
FHSFITPSRL F
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.198630.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012456587.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X1
RefseqXP_012456588.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X1
SwissprotP479271e-109AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLA0A0D2RK800.0A0A0D2RK80_G
STRINGVIT_07s0031g00220.t011e-170(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.24e-91AP2 family protein